Library / Automated CRISPR gRNA Assembly

Automated CRISPR gRNA Assembly

Hands-free assembly of CRISPR gRNA constructs — anneal, ligate, transform, and screen.

SimulatedMolecular biology⏱ ~2h + cultureIntermediateThermocyclergRNA constructs

What this protocol does

This protocol automates assembly of CRISPR gRNA constructs on the Undergrad: it preps and anneals the guide oligos into a duplex insert, ligates the insert into a digested CRISPR vector, transforms competent cells, plates on selection, and screens colonies for correct constructs. Thermocycling, magnetic clean-up, and the ligation/transformation liquid handling run hands-free with camera checks on the bead steps.

Who it's for

Genome-editing and synthetic-biology labs building guide libraries or one-off constructs that want fast, reproducible gRNA cloning without the repetitive pipetting of anneal-ligate-transform across many guides.

The four-layer architecture at a glance

Four-layer architecture diagram for Automated CRISPR gRNA Assembly: intent, semantic workflow, robot actions, and atomic actions.
Intent → semantic workflow → robot actions → atomic actions — every stage runs through the same four layers on the Undergrad.

In this protocol